PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000162.1_g150.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 147aa    MW: 16849.1 Da    PI: 8.1011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000162.1_g150.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-097296126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               +kt+lC++f   G C+yG+ C+FaHg
  Pav_sc0000162.1_g150.1.mk 72 FKTRLCNNFKM-GNCHYGPGCCFAHG 96
                               79*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MSDSGPTCQF FAPYLESGDN RHQLKPEFPN VDKDFKDLSD IESQPFKKPR TSEVVLISTI  60
PMAQNKMLHC NFKTRLCNNF KMGNCHYGPG CCFAHGISDL HKTWPNWQGL ETEEGFKART  120
CDHRRTSNDV CRLFFNGGKC TYGDKCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-08C3H family protein