PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000169.1_g090.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GeBP

Protein Properties

Length: 608aa MW: 68701.3 Da PI: 6.9478

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000169.1_g090.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	81.3	1.4e-25	156	248	4	98
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 r+wse De+v+ +G+i+f +k + d ++fy+ ++k i+++vs+ q+ +K+ rLKkK+++++++ +g++p+fsk+h+q Pav_sc0000169.1_g090.1.mk 156 ARVWSERDELVMVKGIISFLKKFT---TFDGKKFYNWINKYIEADVSTGQIADKVCRLKKKYRNNEANrGPNGEDPVFSKPHEQ 236 69***************54443...569*****************************99988689********* PP DUF573 87 kifelskkiWgs 98 k felsk+ Wgs Pav_sc0000169.1_g090.1.mk 237 KLFELSKQAWGS 248 ********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MAVSQSSSSS YDFSSYSSSS SFDEDHPSDS YDDELEDEQL VAPDSQESPT LVGSDTEYRC 60 ESEPDSEADS AKKNKTKSKT KTDTNVEAKS KNKSNEKRPR EKPEEKGGDA SNKKRKKAEN 120 ETNLQTGGDN AKDKDKEMMK KKKNKSRSSS SAAANARVWS ERDELVMVKG IISFLKKFTT 180 FDGKKFYNWI NKYIEADVST GQIADKVCRL KKKYRNNEAN RGPNGEDPVF SKPHEQKLFE 240 LSKQAWGSIR STTNNNNNTK ADINDGIVEE GADAQKKATD VVDDDNLQEK EVLFDDNLVM 300 EAFDKYLTSR GLDLRWFSQD KLGSLENKWR KIRRYMLATS LIIISMAALA LAPIDPDTPS 360 FDGYESGGSY GHRRQLQLED TIIPDTCDED NQFDVLFETD AEPKFKSSAN SNDNSAQEVI 420 KSDPKKNKTE NVASNTEKKS PSSTHAAAAK EKRPREGLAC NASVAKKSKK NNVKKEAIPE 480 IDEDAHVAED GQVVEKKKKQ QIKKKKKKKK NSVSTEEKKT SNDCADHEKV EEKKEEGGFV 540 NVMKACERYL ASHVVDWRWI KNERMVKLEK MWVKLRGAES VFRSLQAEFD AELHRVALDA 600 YISYEDRC

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MAVSQSSSSS YDFSSYSSSS SFDEDHPSDS YDDELEDEQL VAPDSQESPT LVGSDTEYRC  60
ESEPDSEADS AKKNKTKSKT KTDTNVEAKS KNKSNEKRPR EKPEEKGGDA SNKKRKKAEN  120
ETNLQTGGDN AKDKDKEMMK KKKNKSRSSS SAAANARVWS ERDELVMVKG IISFLKKFTT  180
FDGKKFYNWI NKYIEADVST GQIADKVCRL KKKYRNNEAN RGPNGEDPVF SKPHEQKLFE  240
LSKQAWGSIR STTNNNNNTK ADINDGIVEE GADAQKKATD VVDDDNLQEK EVLFDDNLVM  300
EAFDKYLTSR GLDLRWFSQD KLGSLENKWR KIRRYMLATS LIIISMAALA LAPIDPDTPS  360
FDGYESGGSY GHRRQLQLED TIIPDTCDED NQFDVLFETD AEPKFKSSAN SNDNSAQEVI  420
KSDPKKNKTE NVASNTEKKS PSSTHAAAAK EKRPREGLAC NASVAKKSKK NNVKKEAIPE  480
IDEDAHVAED GQVVEKKKKQ QIKKKKKKKK NSVSTEEKKT SNDCADHEKV EEKKEEGGFV  540
NVMKACERYL ASHVVDWRWI KNERMVKLEK MWVKLRGAES VFRSLQAEFD AELHRVALDA  600
YISYEDRC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	117	KKRKK
2	113	145	KKRKKAENETNLQTGGDNAKDKDKEMMKKKKNK
3	114	146	KKRKKAENETNLQTGGDNAKDKDKEMMKKKKNK
4	134	143	KDKEMMKKKK
5	466	498	KKRKKAENETNLQTGGDNAKDKDKEMMKKKKNK
6	496	510	KKKKQQIKKKKKKKK
7	503	509	KKKKKKK
8	504	510	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	3e-17	GeBP family protein