PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000174.1_g1250.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 320aa    MW: 34806 Da    PI: 8.723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000174.1_g1250.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20145194255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a++ a+++++g
  Pav_sc0000174.1_g1250.1.mk 145 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDDAARRIRG 194
                                 69*******.**********72....35*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MEGRRAATLS LCVLCHAKPL FCVEVTPPVS GNINNMCGGA IISDFISVKR GRTLTAEDLW  60
SEFDTISDFL GLDHSSSSNN NNNNNKKEQF EHQQNNTRVA QKPKPPLSKG AGTSEKPKKT  120
CPGAGAQKEE VGKASDKNKR VRKNVYRGIR QRPWGKWAAE IRDPHKGVRV WLGTYNTAEE  180
AARAYDDAAR RIRGGKAKLN FPELPSSSVP APAPATATRP LKKRCVVGPA ESTQSSLGSN  240
GNCCNYDPFE GGDIYGKKEV GGEYELKEQI LSLESFLGLD EEEASEVNGS GGGKPNKSLD  300
LWMLGDLVTH HQQQQGGQLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-47ERF family protein