PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000175.1_g040.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 670aa MW: 74459.5 Da PI: 6.2647

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000175.1_g040.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.9e-06	91	115	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+ G C+y d+C+F+H+ Pav_sc0000175.1_g040.1.mk 91 ICPEVAKRGdvsRCPYNDKCRFSHD 115 699999999999************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MDESPAEPAP VPKVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRACSNE QNDAVSGGKT 60 KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYNDKC RFSHDIEAYK 120 AQKPEDIEGD CPFMTAQETC PYGLACRFLG SHKDGVEAGD VSAHRRISEM NGLSKDVQKL 180 LWKNKGHANS KIKILENKKD DQVISNNCHV TDGNGCTELP NNSDDKMEFA AEIREENGVD 240 ETFSLDESRP LKKPRSVIEE EILSGEVDDG GVNATAEVVE PSCTSPEPEA TADIVSPESD 300 RSLKLHPREK KLIDFREKLY LAPLTTVGNL PFRRVCKGLG ADITCGEMAM CTNLLQGQAS 360 EWALLRRHSS EDLFGVQICG AYPDTVARTV ELVNQECTVD FIDINMGCPI DIVVNKGAGS 420 ALLTKPMRMK GIVQAASGTV DCPITIKVRT AYFEGKNRID SLIADMGNWG ASAVTIHGRS 480 RQQRYSKLAD WEYVYQCARK APDALPVLGN GDIFSYLDWN KHQAECPELS TCMIARGALV 540 KPWIFTEIKE QRHWDISSGE RLNILKDYVR LGLEHWGSDT KGVETTRRFL LEWLSYTCRY 600 VPVGLLEVIP QRLSWRPPSY FGRDDLETLM ASDSAADWVR ISEMLLGKVP DGFTFAPKHK 660 SNSYDRAENG

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MDESPAEPAP VPKVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRACSNE QNDAVSGGKT  60
KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYNDKC RFSHDIEAYK  120
AQKPEDIEGD CPFMTAQETC PYGLACRFLG SHKDGVEAGD VSAHRRISEM NGLSKDVQKL  180
LWKNKGHANS KIKILENKKD DQVISNNCHV TDGNGCTELP NNSDDKMEFA AEIREENGVD  240
ETFSLDESRP LKKPRSVIEE EILSGEVDDG GVNATAEVVE PSCTSPEPEA TADIVSPESD  300
RSLKLHPREK KLIDFREKLY LAPLTTVGNL PFRRVCKGLG ADITCGEMAM CTNLLQGQAS  360
EWALLRRHSS EDLFGVQICG AYPDTVARTV ELVNQECTVD FIDINMGCPI DIVVNKGAGS  420
ALLTKPMRMK GIVQAASGTV DCPITIKVRT AYFEGKNRID SLIADMGNWG ASAVTIHGRS  480
RQQRYSKLAD WEYVYQCARK APDALPVLGN GDIFSYLDWN KHQAECPELS TCMIARGALV  540
KPWIFTEIKE QRHWDISSGE RLNILKDYVR LGLEHWGSDT KGVETTRRFL LEWLSYTCRY  600
VPVGLLEVIP QRLSWRPPSY FGRDDLETLM ASDSAADWVR ISEMLLGKVP DGFTFAPKHK  660
SNSYDRAENG