PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000175.1_g230.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 219aa MW: 25857.3 Da PI: 9.9884

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000175.1_g230.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.2	3.2e-19	6	112	1	88
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkakl 66 ++Y+eY+++ GF +r+++s+k+ +r +e+++r+fvC egk +++++ +++ ++ ++ ++gCka++ Pav_sc0000175.1_g230.1.br 6 NYYEEYGRQEGFWIRTRSSSKTrRRLDEVKSRQFVCAHEGKYVPKNTTqkaseenderniseienMKRTGKNCSTVKCGCKASM 89 69***********9998888678899**********9988888889999999999998666667788999****** PP FAR1 67 kvkkek.dgkwevtkleleHnHe 88 ++k+++ ++kw+v++++ HnH+ Pav_sc0000175.1_g230.1.br 90 RIKLDRwSNKWKVSSFQDSHNHK 112 ********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MEEARNYYEE YGRQEGFWIR TRSSSKTRRR LDEVKSRQFV CAHEGKYVPK NTTQKASEEN 60 DERNISEIEN MKRTGKNCST VKCGCKASMR IKLDRWSNKW KVSSFQDSHN HKPVTPERRM 120 KMKSNRIMPK AAKILTETFH EENLPIAKVP SILGGPHIGF NNRDCYNHLR NVRHRQLDGG 180 DAQSVLTYFR KKQAENPQFF YAIQCDEREL MDYLFGDRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-26	FAR1 family protein