PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000175.1_g580.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 117aa    MW: 13510.4 Da    PI: 8.6861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000175.1_g580.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031233323
                               ETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                               C +C+ +F+++ +   Hi+  H
  Pav_sc0000175.1_g580.1.mk 12 CDYCDIPFNNHAQVLEHIKDnH 33
                               ******************9766 PP
2zf-C2H210.70.001688107219
                                EET..TTTEEESSHHHHHHH CS
                    zf-C2H2   2 kCp..dCgksFsrksnLkrH 19 
                                +C+  +C++ Fs+ s+++ H
  Pav_sc0000175.1_g580.1.mk  88 VCNkpKCHRKFSNISQFEDH 107
                                68999*************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MNYQFDEDSV FCDYCDIPFN NHAQVLEHIK DNHPGALKAK AEYVEKGEII ICNLCSNGHI  60
NAKEFKNNNG LIYHQKMVHR GSKSKFIVCN KPKCHRKFSN ISQFEDHKPR CGKTLKA