PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000176.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 24514.1 Da    PI: 9.382
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000176.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+++fs++gkl+ey++
  Pav_sc0000176.1_g050.1.mk  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALVVFSNKGKLFEYAT 59
                               79***********************************************86 PP
2K-box97.52e-32861711297
                      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                                + + +++ e+++Lk+++e Lqr+qRh+lGedL+sL+lke+q+Le+qLe++lk+iR +Kn+l++e+i+elq+ke+++qe+n+ L 
  Pav_sc0000176.1_g050.1.mk  86 ESQCNWTFEYSRLKAKVELLQRNQRHYLGEDLDSLTLKEIQSLEHQLETALKQIRLRKNQLMHESISELQRKERAMQEQNNLLA 169
                                55679*****************************************************************************99 PP

                      K-box  96 kk 97 
                                kk
  Pav_sc0000176.1_g050.1.mk 170 KK 171
                                87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALVVFSN KGKLFEYATD  60
SCMDQILDRY ERYSYAERQL VEPNFESQCN WTFEYSRLKA KVELLQRNQR HYLGEDLDSL  120
TLKEIQSLEH QLETALKQIR LRKNQLMHES ISELQRKERA MQEQNNLLAK KKSINLGTQQ  180
DEFLQVRRNQ LDLTLEPLYS CNLGCFAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-106MIKC_MADS family protein