PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000176.1_g060.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20400.9 Da    PI: 6.5083
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000176.1_g060.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.7e-31959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++gklye++s
  Pav_sc0000176.1_g060.1.mk  9 KRIENNINRQVTFTKRRNGLLKKAYELSVLCDAEVALVVFSTRGKLYEFCS 59
                               79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MGRGKVELKR IENNINRQVT FTKRRNGLLK KAYELSVLCD AEVALVVFST RGKLYEFCSG  60
SSMEKTLERY QRCSYSALEA SQPAQDSQVV DSLSIEQMLL EANNELRRKL EECNAAIERY  120
SWTTKEQNQN AQFEGFLDHS QCNNTLQIGY NPPAVTDHHE LQSSTQSHSG LFVPGTWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.34e-46MIKC_MADS family protein