PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000176.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 145aa    MW: 15399.2 Da    PI: 8.3723
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000176.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY100.24.6e-3141102102163
                      YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                                + +++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  Pav_sc0000176.1_g090.1.mk  41 PISSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 102
                                445667889999************************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MQLSAAGSRS STYDDDDFVS GGCAGCCSDF RKGQSSSSSS PISSEPSSPK APFVVKPPEK  60
KHRLPSAYNR FMKEEIQRIK AANPEIPHRE AFSAAAKNWA RYIPSPSAGS DSGSCSSTNN  120
IDALKGSDFA GMNILAMCCQ NPKTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-29YABBY family protein