PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000184.1_g690.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 260aa    MW: 28911.7 Da    PI: 6.3414
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000184.1_g690.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.7e-55811841101
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql+sfw++q   ie + dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa
  Pav_sc0000184.1_g690.1.mk  81 QLQSFWAEQyqeIEAVMDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAA 164
                                89*****999899*********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdel 101
                                a+trtdifdflvdivpr++l
  Pav_sc0000184.1_g690.1.mk 165 AITRTDIFDFLVDIVPREDL 184
                                *****************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MDQQGHGHPT TMGVAGSAAQ ASYGVNPYQS GQMMVLSPTG SVGLMQSPTQ PAGPPASSQL  60
AQHQLAYQHI HQQQQQQLQQ QLQSFWAEQY QEIEAVMDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGGNLPV GSSTDGVPYY YMPAQHAPQV GAPGMIVGKP VMDQTLYGQQ  240
THPYIAQPTW PQQQQPHKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.38e-82NF-YC family protein