PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000184.1_g710.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 192aa MW: 21911.5 Da PI: 7.1286

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000184.1_g710.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.9	8.3e-55	49	152	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql+sfw++q ie + dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa Pav_sc0000184.1_g710.1.mk 49 QLQSFWAEQyqeIEAVMDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAA 132 89***999899******************************************************************* PP NF-YC 82 avtrtdifdflvdivprdel 101 a+trtdif+flvdivpr++l Pav_sc0000184.1_g710.1.mk 133 AITRTDIFNFLVDIVPREDL 152 ***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MMVLSPTGSV GLMQSPTQPA GPPASSQLAQ HQLAYQHIHQ QQQQQLQQQL QSFWAEQYQE 60 IEAVMDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN 120 KRRTLQKNDI AAAITRTDIF NFLVDIVPRE DLKDEVLASI PRGGNLPIEV RLMVCLTITC 180 LLSMLHRLVL RV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	2e-71	NF-YC family protein