PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000192.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 239aa    MW: 26561.6 Da    PI: 6.7342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000192.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-081232346
                               -HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                               +W++Ia++++ +Rt++++k++w++
  Pav_sc0000192.1_g040.1.mk  1 RWSAIAAHLP-KRTDNEIKNYWHS 23
                               4*********.***********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
RWSAIAAHLP KRTDNEIKNY WHSRLKKRLA LKGYDPVTHR PKTTIFGSAN GSTDDPKTGS  60
NLNHIAQWES ARLQAEARFV RDSDLHKQAN HPYNNNDISA TSSILLGHNK DFGPTDQLFG  120
QNTPQCLDIL RAWESILMSN DSKAAGGQDH VSSFGNHLAG DFEPPLISAI SSNGSSLMDC  180
FFHEPVGQCF DENYGTSITE PFAVHNNMGF KNGACLEDFG LWEVIMQGRK DCPISRISM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-30MYB family protein