PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000203.1_g230.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 382aa MW: 42000.6 Da PI: 9.0029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000203.1_g230.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pav_sc0000203.1_g230.1.mk 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.6	0.00042	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pav_sc0000203.1_g230.1.mk 82 WKCDKCSKKYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRLNK EVKKKVYICP EKSCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 120 DSFITHRAFC DALTEESARL TSSVAGAATN LNFGNETMLN NTMMHNSHAV QDDVSQISQY 180 GQGLIRQDFN GLDHHHHQHE KPSLSLWLNQ QQANSNSHQL NLMDNMAANP NQLYVTSSSS 240 TAFPDMAQMP SANNLNQLFG SPNAMSTFGS SNTNLFGSGS ASSSTSTSAA NNLSLSSPIQ 300 EGGGGANSNT SSTLEQLMNN ITHRGSSTIG NLDHQNSLTR DFLGMGGGGG AADQLSHNNR 360 PMFSPQELAK FASSMSQFTG NH

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRLNK EVKKKVYICP EKSCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALTEESARL TSSVAGAATN LNFGNETMLN NTMMHNSHAV QDDVSQISQY  180
GQGLIRQDFN GLDHHHHQHE KPSLSLWLNQ QQANSNSHQL NLMDNMAANP NQLYVTSSSS  240
TAFPDMAQMP SANNLNQLFG SPNAMSTFGS SNTNLFGSGS ASSSTSTSAA NNLSLSSPIQ  300
EGGGGANSNT SSTLEQLMNN ITHRGSSTIG NLDHQNSLTR DFLGMGGGGG AADQLSHNNR  360
PMFSPQELAK FASSMSQFTG NH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-90	C2H2 family protein