PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000207.1_g880.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 108aa    MW: 12054.9 Da    PI: 10.4963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000207.1_g880.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.24.1e-0881103123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+dCgk+F+  s L++H ++H
  Pav_sc0000207.1_g880.1.br  81 HVCQDCGKVFKFASKLRKHENSH 103
                                79*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MPKPAEPNRT KPDMNGIDIL KKFLLDSVEH WIPHKELQNA RGFDLNGPVP GGRPPGKLHQ  60
ASLNQIALPT EASRIGGQKK HVCQDCGKVF KFASKLRKHE NSHGSFHF