PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000212.1_g1960.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 611aa MW: 67293.4 Da PI: 6.9594

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000212.1_g1960.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	318	340	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Pav_sc0000212.1_g1960.1.mk 318 RLCFKFVSSGSCPRGENCNFQHD 340 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MAPPKILLCG DVLGHLKQLF KRVASVNKSA GPFDALFCVG QFFPDSADQL DEFNDYIEGR 60 AQIPLPTYFI GDYGGAATKV LLAATKDSGN QGFKLDGLKI CNNLYWLKGS GKFKLHGLSV 120 AYLSGLQCSG SQQFGTYSQD DVDVLRAVAE EPGIIDFGIT NRAAASDVPP GASEPFGSDS 180 TVAELVAEIK PRYHIAGTKG VYYTREPYSN VDAVHVTRFL GLAPVGNKDK QASYLSTISN 240 YIHKFIHAIS PTPASTMSSV EISTKSPTTT LSPYTYGEKT DHATEAGKRS SDSISDSQYW 300 RYDVNQKRQK HGAGDGNRLC FKFVSSGSCP RGENCNFQHD VDAREQSLRG VCFDFMNKGK 360 CERGPDCKFK HSLQAEGESN SHQRRGSGNA NSNRSTECWF CLSSPKVESH LIISIGEHYY 420 CALAKGPLVE DHVLLIPIGH SPNTLSLPSE CEIELGKFQD ALKEYYKKQG KDVVFFEWAS 480 KRTTHANLQA VPVPSAKSAA VQNIFNLAAE KLGFKFETTK SGNNSDGRTM LRTQFDRNLS 540 FFYVQLADGT ILSHSIEENE RFLPQFGREV IAGLLNKADR ADWRNCTDSK EEEAKMAGDF 600 KSGFEEFDPN K

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MAPPKILLCG DVLGHLKQLF KRVASVNKSA GPFDALFCVG QFFPDSADQL DEFNDYIEGR  60
AQIPLPTYFI GDYGGAATKV LLAATKDSGN QGFKLDGLKI CNNLYWLKGS GKFKLHGLSV  120
AYLSGLQCSG SQQFGTYSQD DVDVLRAVAE EPGIIDFGIT NRAAASDVPP GASEPFGSDS  180
TVAELVAEIK PRYHIAGTKG VYYTREPYSN VDAVHVTRFL GLAPVGNKDK QASYLSTISN  240
YIHKFIHAIS PTPASTMSSV EISTKSPTTT LSPYTYGEKT DHATEAGKRS SDSISDSQYW  300
RYDVNQKRQK HGAGDGNRLC FKFVSSGSCP RGENCNFQHD VDAREQSLRG VCFDFMNKGK  360
CERGPDCKFK HSLQAEGESN SHQRRGSGNA NSNRSTECWF CLSSPKVESH LIISIGEHYY  420
CALAKGPLVE DHVLLIPIGH SPNTLSLPSE CEIELGKFQD ALKEYYKKQG KDVVFFEWAS  480
KRTTHANLQA VPVPSAKSAA VQNIFNLAAE KLGFKFETTK SGNNSDGRTM LRTQFDRNLS  540
FFYVQLADGT ILSHSIEENE RFLPQFGREV IAGLLNKADR ADWRNCTDSK EEEAKMAGDF  600
KSGFEEFDPN K