PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000220.1_g2460.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 633aa MW: 69129.3 Da PI: 6.8524

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000220.1_g2460.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	4e-30	287	346	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+ Pav_sc0000220.1_g2460.1.mk 287 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCADDMSILITTYEGSHNHP 346 58************************999**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MEMPKRRSKA MESNNTEENS FLGNTPVEDK TKKSDGHDEE GTSMEMEISK SSSSMDITIQ 60 GGHGWLAEPE QTNTLMPSSS TGKDRALVKH TQEDELQSAK AEMGEVREEN ERLKLLLSRI 120 VRNYQSLQMN FLGLLQKDEE AKKSMDPSSS ARDQSNEQDE DADELVSLSL WRSSSTDQPR 180 KDEQTKKNSH FSKNGKGDDE EGLNGAGLAL ELGCRFEPAA DQSTEVVMKN SSSHNSCGDP 240 KEDDPTEIWP PSKTLKTTRS GDDEVSQQTH LKKARVSVRA RCDAPTMNDG CQWRKYGQKI 300 AKGNPCPRAY YRCTVSPSCP VRKQVQRCAD DMSILITTYE GSHNHPLPMS ATAMASTTSA 360 AASMLQSHSS TSQQGHTAMA PISASTNLQG LNFSTSTLSQ NSRLPQHFYF PNSSISTTNS 420 HPTITLDLTA PSPSHFGRFP AAVFSSNPRY PSTCLNFSSS PSSSLDHNNH TLQLQAPWNN 480 NHTAAGYLNY GNRVLNQVGS APSMGKQSIF QEPNNLYQSY IQNQKPPPPP LPPPPYQQLM 540 LTETIASATK AITSNPKFQS ALAAALTSFV GTNNGGSATT GVTENPHHHR HQSSTSTESG 600 LKLKWAESFT TNPIYPPSPN GIGCASSYLN KSS

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MEMPKRRSKA MESNNTEENS FLGNTPVEDK TKKSDGHDEE GTSMEMEISK SSSSMDITIQ  60
GGHGWLAEPE QTNTLMPSSS TGKDRALVKH TQEDELQSAK AEMGEVREEN ERLKLLLSRI  120
VRNYQSLQMN FLGLLQKDEE AKKSMDPSSS ARDQSNEQDE DADELVSLSL WRSSSTDQPR  180
KDEQTKKNSH FSKNGKGDDE EGLNGAGLAL ELGCRFEPAA DQSTEVVMKN SSSHNSCGDP  240
KEDDPTEIWP PSKTLKTTRS GDDEVSQQTH LKKARVSVRA RCDAPTMNDG CQWRKYGQKI  300
AKGNPCPRAY YRCTVSPSCP VRKQVQRCAD DMSILITTYE GSHNHPLPMS ATAMASTTSA  360
AASMLQSHSS TSQQGHTAMA PISASTNLQG LNFSTSTLSQ NSRLPQHFYF PNSSISTTNS  420
HPTITLDLTA PSPSHFGRFP AAVFSSNPRY PSTCLNFSSS PSSSLDHNNH TLQLQAPWNN  480
NHTAAGYLNY GNRVLNQVGS APSMGKQSIF QEPNNLYQSY IQNQKPPPPP LPPPPYQQLM  540
LTETIASATK AITSNPKFQS ALAAALTSFV GTNNGGSATT GVTENPHHHR HQSSTSTESG  600
LKLKWAESFT TNPIYPPSPN GIGCASSYLN KSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-70	WRKY family protein