PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000220.1_g2470.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 194aa    MW: 21212 Da    PI: 10.258
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000220.1_g2470.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly20.39e-0795128134
                      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGgl 34 
                                 s+yk+kaal+v++++p+f+ald  +l ++  G+l
  Pav_sc0000220.1_g2470.1.mk  95 SIYKGKAALTVEPKAPEFTALDVFSLSVTEIGSL 128
                                 7********************9988888887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MLRLHSLASP AVAAQKPNQN PKQCSPSRVF STNSFGFAPS LSSSRKRLSL KCRQSEYFDQ  60
QRASTASAPN KPSPPAPQTP AGGTGLPPRF FVGHSIYKGK AALTVEPKAP EFTALDVFSL  120
SVTEIGSLNK LINLDESVYI PITRAEFAVL KSAFNFILPY ILGWHAYANS IKPEDSSRQN  180
NSSSRYGGDF EWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.15e-50Whirly family protein