PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000228.1_g070.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 227aa    MW: 26051.1 Da    PI: 7.4213
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000228.1_g070.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.1e-2184174190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                                +fY++YA  +GFs+r+s+ ++s + g ++ r++vCskeg+r+++ ++ ++  +++r+etr +C+a++ vk    ++ + vtk++
  Pav_sc0000228.1_g070.1.br  84 RFYCNYALAIGFSIRRSRLRRS-EGGVVMGRQWVCSKEGSRSKKWTNrDNMVHTPRKETRENCHATFSVKYCPkRDAYIVTKFV 166
                                5********************9.8999***************9988845566779*****************999********* PP

                       FAR1  83 leHnHela 90 
                                +eH+H la
  Pav_sc0000228.1_g070.1.br 167 TEHSHRLA 174
                                *****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MDAEASKTNG IQGQNSVPNS EGYFAEAESL EETENAPSLQ ILDSRTEEIT EKSGQFEYDG  60
LNFQNMSIAD LAEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE  120
GSRSKKWTNR DNMVHTPRKE TRENCHATFS VKYCPKRDAY IVTKFVTEHS HRLANSCEVP  180
FLRSHRCVTE SNIAQSMSMR KASIKTNWTY DYMVDQAGGY MKVQILN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-12FAR1 family protein