PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000257.1_g1260.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 238aa    MW: 26073.3 Da    PI: 7.8939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000257.1_g1260.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-134793354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                ++h+e+ErrRR+riN  +++Lr+llP+      ++ +Ka+ L ++v+++++L
  Pav_sc0000257.1_g1260.1.mk 47 KSHKEAERRRRQRINAHLSTLRTLLPNT-----TRTDKASLLAEVVQHVREL 93
                                79*************************9.....8***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MLPFLSWSDQ NHYAHDPSLV NLMDGADSIL SPAASMTETS RSAEASKSHK EAERRRRQRI  60
NAHLSTLRTL LPNTTRTDKA SLLAEVVQHV RELRRQAADL ARQDGGSCCG GTTGSEPWPF  120
PGESDEATVS YCDGEARLLK ATLCCEDRPG LNRDLIQAIR SVRATAIRAE MMTVGGRTKN  180
VIVMQWAGGG GEEEVRALKR ALKAVVENRA SGSGPGRLFL GNKQARVYGS IYEDENEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.14e-29bHLH family protein