PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000257.1_g1300.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 24537.9 Da    PI: 4.892
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000257.1_g1300.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.6e-261161151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                k+i+n   rqvtfskRr gi+KKA ELSvLC+ evaviifs tgkl++yss
  Pav_sc0000257.1_g1300.1.mk 11 KKIDNLPARQVTFSKRRRGIFKKAAELSVLCESEVAVIIFSATGKLFDYSS 61
                                689999*******************************************96 PP
2K-box44.85.4e-16861601286
                       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                                  + +  ++++ +L ke+ +  r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i  l +k+ +
  Pav_sc0000257.1_g1300.1.mk  86 VELQPENENHIRLSKELGEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDELIMSEIMALERKMLS 160
                                 456667788889999999999************************************************999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MKMMREKIKI KKIDNLPARQ VTFSKRRRGI FKKAAELSVL CESEVAVIIF SATGKLFDYS  60
SSSTKDVIER YKAHINGAEK SDEPSVELQP ENENHIRLSK ELGEKSRQLR QMKGEDLEEL  120
NFDELQKLEQ LVDASLGRVI ETKDELIMSE IMALERKMLS RRNIGPALME PERLNNNIGG  180
GGEEEGMSSE SATSTTCNSA PCPSLEDDSD DVTLSLKLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-54MIKC_MADS family protein