PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000257.1_g1310.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 145aa MW: 16816.5 Da PI: 9.4185

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000257.1_g1310.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.4	2.4e-25	19	62	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA+ELSvLC+ evaviifs tgkl++yss Pav_sc0000257.1_g1310.1.br 19 ARQVTFSKRRRGIFKKAKELSVLCESEVAVIIFSATGKLFDYSS 62 69****************************************96 PP
2	K-box	29.7	2.7e-11	87	139	15	64
K-box 15 eslqqela...kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkk 64 +lq e++ +L ke+e r++R+++GedLe+L++ eL++Leq ++ sl + Pav_sc0000257.1_g1310.1.br 87 VELQLEIEnhiRLTKELEAKSRQLRQMKGEDLEELNFDELHKLEQLVDASLGR 139 444444441116777888778****************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MVKMMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAKELSV LCESEVAVII FSATGKLFDY 60 SSSSTKDVVE RYKAHTNSVE KSDELSVELQ LEIENHIRLT KELEAKSRQL RQMKGEDLEE 120 LNFDELHKLE QLVDASLGRA IETEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	2e-46	MIKC_MADS family protein