PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000269.1_g380.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 453aa MW: 49756.9 Da PI: 6.6524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000269.1_g380.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	343	381	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Pav_sc0000269.1_g380.1.mk 343 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MADEFQTTGN WWDSSTRTRF ETGTSPPSST LNSLGSFGWQ PDMVDIKARS SMDSGSVSGT 60 SSMVFHGAHK LEEGPDSATG SGGDPSLHMM GLGLSSQPTD WNHALFRGEK AETSFRSILQ 120 ENMNSNTNFH QENDQQLQWR DKLFAGGCGD SSNNEFKQMN RGFSLDQTQF SPQYSSGDST 180 VTCQGLPSSF QMDSGAALYG SPSTILQGLL GPHHDNQQPN SAPMNFPYQA NYGVNSSDQL 240 LPSWSKVPQF LRTSPPKQPP QSHLQFSNNA TFWNAPHEAA MKDVRPSFFP SLQQQFPTAR 300 FEEKPKNISE VQESGAVGKK SGSETASKRP RNETSSPLPA FKVRKEKMGD RITALQQLVS 360 PFGKTDTASV LSEAIEYIKF LHEQVNVLST PYMKSGAAIQ HQQNTDKSKD PDQGPKQDLR 420 SRGLCLVPVS STFPVTHGTT VDFWTPTFGG TFR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MADEFQTTGN WWDSSTRTRF ETGTSPPSST LNSLGSFGWQ PDMVDIKARS SMDSGSVSGT  60
SSMVFHGAHK LEEGPDSATG SGGDPSLHMM GLGLSSQPTD WNHALFRGEK AETSFRSILQ  120
ENMNSNTNFH QENDQQLQWR DKLFAGGCGD SSNNEFKQMN RGFSLDQTQF SPQYSSGDST  180
VTCQGLPSSF QMDSGAALYG SPSTILQGLL GPHHDNQQPN SAPMNFPYQA NYGVNSSDQL  240
LPSWSKVPQF LRTSPPKQPP QSHLQFSNNA TFWNAPHEAA MKDVRPSFFP SLQQQFPTAR  300
FEEKPKNISE VQESGAVGKK SGSETASKRP RNETSSPLPA FKVRKEKMGD RITALQQLVS  360
PFGKTDTASV LSEAIEYIKF LHEQVNVLST PYMKSGAAIQ HQQNTDKSKD PDQGPKQDLR  420
SRGLCLVPVS STFPVTHGTT VDFWTPTFGG TFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-89	bHLH family protein