PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000293.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 120aa    MW: 14195 Da    PI: 9.5278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000293.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-081445132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                               +g+WT+eEd++l++ +   G  +W+++++  g
  Pav_sc0000293.1_g140.1.mk 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAG 45
                               79**************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLISII IFILLFCHCI  60
LERDRERFRE REKKKKMLCK FECSVIHSVS FLQGRVFSVN VFEFQNFYKF LFCFQKLGLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076EREKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-28MYB family protein