PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000293.1_g600.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 108aa    MW: 12040.6 Da    PI: 7.9423
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000293.1_g600.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260902.9e-281391179
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79
                               aCa+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s + e++ r +dPv+ ++++
  Pav_sc0000293.1_g600.1.br 13 ACASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESFLTEGNTRKNDPVRAVLAL 91
                               7************************************************************************988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM  60
AAPDQRQAAA ESFLTEGNTR KNDPVRAVLA LSEVSMPKFG DLKENSIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-20LBD family protein