PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000299.1_g120.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 173aa    MW: 20212.8 Da    PI: 10.9289
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000299.1_g120.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.6e-09130162136
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkf 36 
                                s+y+GV +++ +grW+A+I   +   g +k+ +lg++
  Pav_sc0000299.1_g120.1.mk 130 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTY 162
                                89****99**********99966...3.6*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MELMVVKNEE NPGRRRLSTA DRETEATRSV KRRRRDPPAV AVSCDNNQSE QQLPQKPADP  60
TSATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNISDYE KEIEIMQTVS KEEYLASLRR  120
KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSKLSLISY LHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11435RRRLSTADRETEATRSVKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-50AP2 family protein