PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000299.1_g280.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 277aa    MW: 31325.4 Da    PI: 6.4952
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000299.1_g280.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.8e-39241231100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                aCaaCk++rr+CakdC+l+p+fpa+qpk f+n+h+l+G+sn++k+ k++++e++++am+s++ye+++ra+ Pv G++g+i++l+
  Pav_sc0000299.1_g280.1.mk  24 ACAACKYQRRRCAKDCPLSPHFPADQPKMFQNAHRLYGVSNIMKIRKQVHPEQQNEAMRSIIYESNMRAKFPVTGCMGIINQLN 107
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                 ql+q+ +el +++++
  Pav_sc0000299.1_g280.1.mk 108 FQLQQAIEELRYVRTH 123
                                **********999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MIIKTIDECT FYPTMTIKGG TSQACAACKY QRRRCAKDCP LSPHFPADQP KMFQNAHRLY  60
GVSNIMKIRK QVHPEQQNEA MRSIIYESNM RAKFPVTGCM GIINQLNFQL QQAIEELRYV  120
RTHLSICKDQ CQYRIPPSPP HYSSCPSSQL QLGMPSNNDA SAALTIYQHQ YQYASAGGGA  180
AAMSFVANEY LANGLSAVYI DDNDMVKPLR VQNPYYSDNN VDQLMAVQSN LVSPQAFPIH  240
QEMDVPHDYD DIPFDTIADD RQSYIESKEA CESRNNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-43LBD family protein