PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000334.1_g780.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 128aa MW: 14385.7 Da PI: 5.652

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000334.1_g780.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.9	4.4e-16	6	79	27	100
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +f +h +FGas+++k+l+ l +er++a+ +++ eA+ar+ dP+y +++ il lqqq+ + +a+l++ + + Pav_sc0000334.1_g780.1.br 6 ITNFSSIHNVFGASKMSKILSVLLMSERSIATWTMTIEAQARVPDPIYCCISYILYLQQQVLKIQAQLDEEHVQ 79 5789***************************************************************9988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence
MHDEAITNFS SIHNVFGASK MSKILSVLLM SERSIATWTM TIEAQARVPD PIYCCISYIL 60 YLQQQVLKIQ AQLDEEHVQL ACAIAPVARV WAAEMVGVEE EESSKRMREG DRRGRWLGWV 120 MMGGVVAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	7e-22	LBD family protein