PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000348.1_g640.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 245aa    MW: 28011.2 Da    PI: 10.709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000348.1_g640.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-1228814198
                               TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                               +s  +W v++  +k +++++++kGWk+Fv++n+Lk  +f+vF   g+ +f  +v ++ 
  Pav_sc0000348.1_g640.1.mk 28 TSAGTWPVNV--KKADNKFFFEKGWKKFVHDNDLKLCEFLVFGCAGDLGF--YVDIYG 81
                               46689*****..*******************************8887666..887765 PP
2B332.51.6e-101642201575
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                  +lp++f+++h    e+  t+tl+ ++g++W vkl +++ +g+  l++G   F+++n+Lk
  Pav_sc0000348.1_g640.1.mk 164 FKYLPRNFVKTHLT--EQRATVTLRVSDGKTWPVKLVFEGVRGK--LGAGFMAFCRDNNLK 220
                                468*******9953..36679***************99999888..9*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MFQKGQIPPA FLVHFEGGKV PQKSHLWTSA GTWPVNVKKA DNKFFFEKGW KKFVHDNDLK  60
LCEFLVFGCA GDLGFYVDIY GRNGCKREFV TAKRDRPHEE GHGIVIYRRS PRHHGKQNLP  120
SVDPIKYEAT DTESETPMHP LAISTGKTIP LQRNNSFNSG KPFFKYLPRN FVKTHLTEQR  180
ATVTLRVSDG KTWPVKLVFE GVRGKLGAGF MAFCRDNNLK LSFTARQKLQ VAPHHQASKS  240
RRRIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-13B3 family protein