PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000348.1_g790.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 245aa    MW: 27673.9 Da    PI: 4.7981
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000348.1_g790.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.6e-36131121100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                aCa+Ck++rrkC + C +apyfpa++ ++f+n++k+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+
  Pav_sc0000348.1_g790.1.br  13 ACASCKHQRRKCDETCEMAPYFPASRYSEFQNAQKIFGVSNIQKIMAMAAPDQRQAAAESIITEGNARKNDPVHGCLGIIRGLN 96 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                 q++ l+ el+ +ke+
  Pav_sc0000348.1_g790.1.br  97 AQIQGLERELHIMKEH 112
                                **********999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MENRDQVAAQ NHACASCKHQ RRKCDETCEM APYFPASRYS EFQNAQKIFG VSNIQKIMAM  60
AAPDQRQAAA ESIITEGNAR KNDPVHGCLG IIRGLNAQIQ GLERELHIMK EHLELCKENE  120
ELDGKKNQSK EEDLQHDQSD GLNFPSTILP DLPSHVMAEM RKYEQGYNYW STLEDAEEKV  180
FDIRLIEPVL FDSNLKRNAS SSGSGESSFE LIIFFLLWNC SAAASKAKEK QPSESLQEKT  240
TDDEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-27LBD family protein