PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000349.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 463aa MW: 50925.7 Da PI: 8.4566

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000349.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.1	1.1e-36	323	423	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C+lapyf++e+ + +f ++hk+FGasnv+k l++l+ ++r +a+ ++ +eA+ar++dP+yG+v++i++l Pav_sc0000349.1_g020.1.mk 323 PCGACKFLRRKCVRGCILAPYFCHEKgATHFSAIHKVFGASNVSKHLAHLSLSDRCEAAVTISWEAQARLQDPIYGCVSHIFAL 406 7*********************9989**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+a+la lk++ Pav_sc0000349.1_g020.1.mk 407 QQQVVNLQAKLAFLKDQ 423 **********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MAGADKYGVQ PPSSWSVGGN HNAGLLYSNP TNQLLSVPKG WRSGDWLCNC ALGTKRLASE 60 ELVHDWDNKR LNVGSTVGHQ QSYPGFEQVV GTSGNHVTGP YTSYPPSVSS GMAPNLQVPM 120 PLTQQTTTHT LLGKGDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV 180 EQDGKTIQLQ IKADCIRTIT SSYYRGAHGI MIVYDVTDQE SFNNVKQWFN EIDRYASENV 240 NKLLVGNKAD LTANKVVSYE TAKAFADEIG IPFMETSAKN ATNVEQAFMA MAAEIKNRYL 300 RKRSSKPSQL KKIIKTMAGS DSPCGACKFL RRKCVRGCIL APYFCHEKGA THFSAIHKVF 360 GASNVSKHLA HLSLSDRCEA AVTISWEAQA RLQDPIYGCV SHIFALQQQV VNLQAKLAFL 420 KDQAAQSFVN GSAVANPNEN RQWGFQDADE LQSVAFSYIH QHS

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MAGADKYGVQ PPSSWSVGGN HNAGLLYSNP TNQLLSVPKG WRSGDWLCNC ALGTKRLASE  60
ELVHDWDNKR LNVGSTVGHQ QSYPGFEQVV GTSGNHVTGP YTSYPPSVSS GMAPNLQVPM  120
PLTQQTTTHT LLGKGDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV  180
EQDGKTIQLQ IKADCIRTIT SSYYRGAHGI MIVYDVTDQE SFNNVKQWFN EIDRYASENV  240
NKLLVGNKAD LTANKVVSYE TAKAFADEIG IPFMETSAKN ATNVEQAFMA MAAEIKNRYL  300
RKRSSKPSQL KKIIKTMAGS DSPCGACKFL RRKCVRGCIL APYFCHEKGA THFSAIHKVF  360
GASNVSKHLA HLSLSDRCEA AVTISWEAQA RLQDPIYGCV SHIFALQQQV VNLQAKLAFL  420
KDQAAQSFVN GSAVANPNEN RQWGFQDADE LQSVAFSYIH QHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-63	LBD family protein