PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000351.1_g620.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 380aa MW: 43690.9 Da PI: 6.2525

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000351.1_g620.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88	1.1e-27	72	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++ Pav_sc0000351.1_g620.1.mk 72 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEI 152 ******************************************************************84...556899*99 PP trihelix 86 e 86 e Pav_sc0000351.1_g620.1.mk 153 E 153 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MYLSEKPRAI DFYKEEGGRD MMIEVVSNED LSQSQTHHPN HQPQQQQQQM LLGDSSGEDH 60 EVKAPKKRAE TWVQDETRSL IALRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC 120 TDKWRNLLKE FKKAKHHDRG SGSAKMSYYK EIEEILKERN KNAQYKSPTP PKVDSFMQFS 180 DKGIEDASIS FAPVEASGRP TLNLERRLDH DGHPLAITAA DAVTASGVPP WNWRETPGNG 240 GEGQSCGRVI LVTWGDYTRR IGIDGTADAI KEAIKSAFRL RTKRAFWLED EDQIVRSLDR 300 DMPLGNYTLH LDEGVAIKVC LYDESDHIPV HTEDKIFYTE DDYRDFLTRR GWSCLREFDG 360 YRNIENMDDL RPGAIYRGVS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MYLSEKPRAI DFYKEEGGRD MMIEVVSNED LSQSQTHHPN HQPQQQQQQM LLGDSSGEDH  60
EVKAPKKRAE TWVQDETRSL IALRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC  120
TDKWRNLLKE FKKAKHHDRG SGSAKMSYYK EIEEILKERN KNAQYKSPTP PKVDSFMQFS  180
DKGIEDASIS FAPVEASGRP TLNLERRLDH DGHPLAITAA DAVTASGVPP WNWRETPGNG  240
GEGQSCGRVI LVTWGDYTRR IGIDGTADAI KEAIKSAFRL RTKRAFWLED EDQIVRSLDR  300
DMPLGNYTLH LDEGVAIKVC LYDESDHIPV HTEDKIFYTE DDYRDFLTRR GWSCLREFDG  360
YRNIENMDDL RPGAIYRGVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein