PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000354.1_g760.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 221aa    MW: 25078.4 Da    PI: 5.3719
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000354.1_g760.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.89.3e-6561712169
                      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveee 80 
                                ++f+ ++q+CyvqC+fC til+vsvP +sl+++ vtvrCGhC+ llsvn++kas    +lla+  + de+ +e  lee    ++
  Pav_sc0000354.1_g760.1.mk   6 HLFDLPDQICYVQCGFCATILLVSVPCSSLSMLaVTVRCGHCSCLLSVNMMKASfvplHLLASLTQ-DEQREELCLEEVD--KQ 86 
                                7899**************************98659****************998666566666665.4444443444333..33 PP

                      YABBY  81 nlksnvekeesastsvsseklsenedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                                n +  ++++  +s  vs+   s+ne+e+ ++  p v++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa f
  Pav_sc0000354.1_g760.1.mk  87 NNRPLDMRS--PSMVVSN---SDNEEEDtISMNPIVNKPPEKRQRAPSAYNRFIKEEIRRLKAENPSMTHKEAFSTAAKNWAQF 165
                                333333333..3333333...44555550555555************************************************* PP

                      YABBY 164 Pkihfg 169
                                P+i f+
  Pav_sc0000354.1_g760.1.mk 166 PPIQFK 171
                                ***996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSALNHLFDL PDQICYVQCG FCATILLVSV PCSSLSMLAV TVRCGHCSCL LSVNMMKASF  60
VPLHLLASLT QDEQREELCL EEVDKQNNRP LDMRSPSMVV SNSDNEEEDT ISMNPIVNKP  120
PEKRQRAPSA YNRFIKEEIR RLKAENPSMT HKEAFSTAAK NWAQFPPIQF KGDGPDGESC  180
TSQREENMTW DSDVPEAHED GKVFRERKAP RHSMWARTPF E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-81YABBY family protein