PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000355.1_g050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 413aa MW: 46118.1 Da PI: 8.7373

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000355.1_g050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	58	102	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd+ll ++v+++ +Wk Ia++++ gRt+ qc rwqk+l Pav_sc0000355.1_g050.1.mk 58 CWTEEEDDLLGELVRKFNRSNWKEIAACLP-GRTDVQCLQRWQKVL 102 6***************99******.**********986 PP
2	Myb_DNA-binding	47.5	4.1e-15	143	185	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT+eE+ l +++++G++ W+ Iar ++ gRt++ +k++w+ Pav_sc0000355.1_g050.1.mk 143 RNAWTEEEEWVLTYYHQLFGNK-WAEIARFLP-GRTDNAIKNHWN 185 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEKVKKEQLQ EVLMDPHEKM GFLLQALYET EGCFDSPASK PSSATRRATG PMRRSAKCWT 60 EEEDDLLGEL VRKFNRSNWK EIAACLPGRT DVQCLQRWQK VLNPEIVKGP WTKELAMQII 120 DYTIMKLIIT FRWYNHLCPA INRNAWTEEE EWVLTYYHQL FGNKWAEIAR FLPGRTDNAI 180 KNHWNCTLKR KLDSYSPNGC HVEMHPDVWN GELRSGLVKI NPAGQISDRL ASLNQRTGLE 240 ISDNACSTEL TLGCSYRHEL CSEWKPVKVQ KCRSSDRGAN SLTNLITSGS SKHSPLSASS 300 SVFVGASAST RSSPLESPSC YSTPQSRAQN VNVNLSSGSS PGSRLKNLAL SFKNTPSIIR 360 KRSSRRPDAS SAAVKSLGRC LEREFDAEND SGVAKCGQLF SAYATSSDVN VGA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEKVKKEQLQ EVLMDPHEKM GFLLQALYET EGCFDSPASK PSSATRRATG PMRRSAKCWT  60
EEEDDLLGEL VRKFNRSNWK EIAACLPGRT DVQCLQRWQK VLNPEIVKGP WTKELAMQII  120
DYTIMKLIIT FRWYNHLCPA INRNAWTEEE EWVLTYYHQL FGNKWAEIAR FLPGRTDNAI  180
KNHWNCTLKR KLDSYSPNGC HVEMHPDVWN GELRSGLVKI NPAGQISDRL ASLNQRTGLE  240
ISDNACSTEL TLGCSYRHEL CSEWKPVKVQ KCRSSDRGAN SLTNLITSGS SKHSPLSASS  300
SVFVGASAST RSSPLESPSC YSTPQSRAQN VNVNLSSGSS PGSRLKNLAL SFKNTPSIIR  360
KRSSRRPDAS SAAVKSLGRC LEREFDAEND SGVAKCGQLF SAYATSSDVN VGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-55	MYB family protein