PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000358.1_g620.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 559aa MW: 61412.3 Da PI: 7.4483

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000358.1_g620.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.8	2.8e-42	177	252	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk+q Pav_sc0000358.1_g620.1.mk 177 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLTEFDDGKRSCRKRLAGHNERRRKPQ 252 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MESWSRISEG KGFVSDETIS HTDSFSRSRN ALMGWELKIP CTFGSNVLVS GQQAIESQGF 60 GELGFPEMMG KHFSNNPIRD VLSGRVYGER STNTTSMATP NFFSGEDESS SKLSSSIVDS 120 NSRDSSLIDL KLGRLADNRD FRDSKFSKGH PVLSSSESST PPKRMRVSGL YSQTAYCQVY 180 GCNKDLSSSK DYHKRHKVCE AHSKTAKVIV NGIEQRFCQQ CSRFHLLTEF DDGKRSCRKR 240 LAGHNERRRK PQVGIHSGRA GRLLQSYNGS RFQDNMLTTA SFICQEILPS GILDAENYGT 300 SDWCRHIKVE DGTHYRPLSG VPVTNGHLPS KPVFPSYDIG KWYPPFHDNG TNPLTGNIII 360 ENGNQYSHDM RGLNYGSHSM FHETTTLGSE DFNVFNTAST VHGLSGISDS GCALSLLSSQ 420 SQKSSSHLSG IPMARPLVMP VSHTNYRPVQ GSENLIGGCS HASSSGVSNK FPSSGMNSGA 480 GTHLGPILLS NGSDTDHFGI SDEIFQGSDF LNAKDRLSCE DGTTIDLLQL SSQLLRVEDQ 540 RQSMQVKQES DAFCCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MESWSRISEG KGFVSDETIS HTDSFSRSRN ALMGWELKIP CTFGSNVLVS GQQAIESQGF  60
GELGFPEMMG KHFSNNPIRD VLSGRVYGER STNTTSMATP NFFSGEDESS SKLSSSIVDS  120
NSRDSSLIDL KLGRLADNRD FRDSKFSKGH PVLSSSESST PPKRMRVSGL YSQTAYCQVY  180
GCNKDLSSSK DYHKRHKVCE AHSKTAKVIV NGIEQRFCQQ CSRFHLLTEF DDGKRSCRKR  240
LAGHNERRRK PQVGIHSGRA GRLLQSYNGS RFQDNMLTTA SFICQEILPS GILDAENYGT  300
SDWCRHIKVE DGTHYRPLSG VPVTNGHLPS KPVFPSYDIG KWYPPFHDNG TNPLTGNIII  360
ENGNQYSHDM RGLNYGSHSM FHETTTLGSE DFNVFNTAST VHGLSGISDS GCALSLLSSQ  420
SQKSSSHLSG IPMARPLVMP VSHTNYRPVQ GSENLIGGCS HASSSGVSNK FPSSGMNSGA  480
GTHLGPILLS NGSDTDHFGI SDEIFQGSDF LNAKDRLSCE DGTTIDLLQL SSQLLRVEDQ  540
RQSMQVKQES DAFCCLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-51	SBP family protein