PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000358.1_g630.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20719.8 Da    PI: 8.5689
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000358.1_g630.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.94.7e-32959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Pav_sc0000358.1_g630.1.mk  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                               79***********************************************96 PP
2K-box87.72.3e-29831591086
                      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                                  +++++++qe+  Lk+++e Lq++qR+llGedL +L+ keL+qLe+qLe sl++iRs+K++++l+q+ +lq+k   
  Pav_sc0000358.1_g630.1.mk  83 PVNETQNSYQEYLTLKARVEVLQQSQRNLLGEDLAPLNTKELEQLEHQLEASLNQIRSTKTQFMLDQLCDLQNKVSH 159
                                55778********************************************************************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS  60
LSMLKTLEKY QRCSYGSLEA NKPVNETQNS YQEYLTLKAR VEVLQQSQRN LLGEDLAPLN  120
TKELEQLEHQ LEASLNQIRS TKTQFMLDQL CDLQNKVSHE SHLRVNVDTY TCTCAYMLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.18e-89MIKC_MADS family protein