PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000358.1_g900.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 577aa MW: 63216.2 Da PI: 8.4484

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000358.1_g900.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.7e-14	271	322	2	55
HHHHHHHHHHHHHHHHHH..HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa..feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Pav_sc0000358.1_g900.1.mk 271 RSKHSATEQRRRSKINDRqvFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 322 889***********98779*****9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA 60 KEEASVEIST AEKPASHAAA AAAQPISSAE HVLPGGIGTY TISHISYFNQ RVPKPEGSPV 120 FTVTQAQASS TDRNVEEHSN CSSYTGSGFT LWEESALKNK GKTGKENVGE RPAGIVRGQW 180 TSSERPAQSS SNNHRNCFSA QSSGQKNISF MEMMKSAAKA STQEDELDDE DEFVLKKETS 240 TTTTTATTPY KGDLRVTVDV KSSDQKANTP RSKHSATEQR RRSKINDRQV FQMLRELIPH 300 SDQKRDKASF LLEVIEYIQF LQEKVNKYEG SYQGWNPDPA KLMPWRNNPK LRESYCDQSR 360 GMNGGSGPAL VFAAKFDEKT TSVSPSIPGS CAQNPVESDT STETTFKAMD HHPGITSKPM 420 PFPLSMQPNF FTPVRSGGAA VPQLPPRLPS DAENTSQHQS MLGQTVSHAT DGAVTRDKLK 480 EQELTIEGGR INISSAYSQG LLNTLTQALQ NSGVDLSQAS ISVQIELGKR ANSRSPIPKS 540 VVKDNEILSS NQGKRHSRVA SGEDSEHAPK KLKTGRN

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA  60
KEEASVEIST AEKPASHAAA AAAQPISSAE HVLPGGIGTY TISHISYFNQ RVPKPEGSPV  120
FTVTQAQASS TDRNVEEHSN CSSYTGSGFT LWEESALKNK GKTGKENVGE RPAGIVRGQW  180
TSSERPAQSS SNNHRNCFSA QSSGQKNISF MEMMKSAAKA STQEDELDDE DEFVLKKETS  240
TTTTTATTPY KGDLRVTVDV KSSDQKANTP RSKHSATEQR RRSKINDRQV FQMLRELIPH  300
SDQKRDKASF LLEVIEYIQF LQEKVNKYEG SYQGWNPDPA KLMPWRNNPK LRESYCDQSR  360
GMNGGSGPAL VFAAKFDEKT TSVSPSIPGS CAQNPVESDT STETTFKAMD HHPGITSKPM  420
PFPLSMQPNF FTPVRSGGAA VPQLPPRLPS DAENTSQHQS MLGQTVSHAT DGAVTRDKLK  480
EQELTIEGGR INISSAYSQG LLNTLTQALQ NSGVDLSQAS ISVQIELGKR ANSRSPIPKS  540
VVKDNEILSS NQGKRHSRVA SGEDSEHAPK KLKTGRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-131	bHLH family protein