PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000359.1_g120.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23358.1 Da    PI: 8.7806
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000359.1_g120.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.8e-201563149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+ien+  r +tfskRr gi KKA+EL  LC+aev +++fs++gk y y
  Pav_sc0000359.1_g120.1.mk 15 KKIENEDDRLITFSKRRSGIYKKASELAALCGAEVGIVVFSPKGKPYSY 63
                               68*******************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MEGKRTRGRQ KIDIKKIENE DDRLITFSKR RSGIYKKASE LAALCGAEVG IVVFSPKGKP  60
YSYGSPAIEY VANRFLNAVA DQNADERISH GILEVYRQAR VYEANENHNE LVGQLEAVKE  120
RSKALQQLAG ERGSEEQQCW WEPALHNQDS QGVKKILESF KGLVNHVCSH LRLRYGSSSN  180
SFDNGIASSS AALPFNAAAG SNPNSQPQPQ P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-39M-type_MADS family protein