PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000363.1_g190.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 213aa    MW: 23005.7 Da    PI: 4.307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000363.1_g190.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05186209123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                + C+ C++sF++   L++H +  H
  Pav_sc0000363.1_g190.1.mk 186 FNCQSCNRSFNSDGALQSHTKAkH 209
                                78*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MMCYLLDCIL ICLTTGDHSD SEEDVALTVV DNGKPVISGK PKVSTEDAKK AIKSEQKEAS  60
SDDDESDDEE VGADQTKVKF EEGSSEDEDE SDDDDDDDAD SEDETDDSEE EDEETPKKAD  120
VSKKRPAEST KTLANNKKAK FVTPEKTDSK KSSVHIATPH PAKQAGKKPA TSDQSKQQAP  180
KSGGTFNCQS CNRSFNSDGA LQSHTKAKHS AAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-29C2H2 family protein