PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000370.1_g280.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 131aa    MW: 14318.3 Da    PI: 7.8644
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000370.1_g280.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY88.81.5e-271382270
                      YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkee 70
                               d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      + + +hl++s+  +
  Pav_sc0000370.1_g280.1.mk 13 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSS 82
                               57789*****************************************887766544443324455555433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MSSSSSASTL SLDHLPPSEQ LCYVHCNICD TVLAVSVPCT SLFKTVTVRC GHCTNLLPVN  60
MRGLLLPSPN QFHHLGHSFF SSPNNSHNLL EEIPNPAPNF LMNQTSVNDF AVRPRGGADE  120
LPRPPAITRR K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.11e-25YABBY family protein