PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000370.1_g780.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 371aa    MW: 42265.2 Da    PI: 8.9801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000370.1_g780.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05129150223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +C  Cg++F +++ L +H + H
  Pav_sc0000370.1_g780.1.mk 129 VCRVCGRRFYTNEKLLNHFKIH 150
                                6*****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MLKHLKFPPI FCTVQSKRLE TLNPLTLFIR YFHFQSKLGF NSSSPSSCLA PQKIVENSVA  60
IFWDLDTKPP KSVSPYEAAV KLKTAASSFG LVRHMIAYAN RHALNYVPQV VRERKERNRV  120
VIRDGELNVC RVCGRRFYTN EKLLNHFKIH EREHAKRLNQ IESARGSRRV KLVGKYSMKM  180
EKYKNGARDV LTPKAGRGLA DEVKRAGFWV RSVVDNPQRV DAALRNHIVD MMDHKRAECL  240
MLVSDDSDFV DVVMEAKLRC LKTVVVGDFG DGALKRAADS GFSWNEILIG KAKKEAVSVV  300
GKWKDRDVLK RLEWTYKPDE EQSVNSWDDE VDGESEDEEI EGIVDGVNDN SGKDVSGRWW  360
ELDSDADSSK C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-105C2H2 family protein