PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000387.1_g060.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27156.8 Da    PI: 5.9787
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000387.1_g060.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-28959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               k+i+n + rqvtfskRr g++KKA+ELSvLCda++a+iifsstgkl+ey+s
  Pav_sc0000387.1_g060.1.mk  9 KKIDNATARQVTFSKRRRGLFKKAQELSVLCDADIALIIFSSTGKLFEYAS 59
                               68***********************************************86 PP
2K-box38.74.4e-14921561983
                      K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 +++ L kei    +++R++ Ge+++ L+l+eLqqLe+ Le +l ++ +kK e ++++i++l + 
  Pav_sc0000387.1_g060.1.mk  92 SNYSALSKEITAQSQQLRQIRGEEIQGLNLEELQQLEKSLEAGLGRVIEKKGEKIMKEISDLERN 156
                                57888999999999**********************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAQELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHN LHAKNLSKIE QPSLELQLVE NSNYSALSKE ITAQSQQLRQ IRGEEIQGLN  120
LEELQQLEKS LEAGLGRVIE KKGEKIMKEI SDLERNGEKI MKEISDLERN AMRLVEENER  180
LRQQVLEKQS SRRPVRADSE NLVMEEGQSS ESVTTNLCNS NSAPQDYESS DTSLKLGCV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-85MIKC_MADS family protein