PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000395.1_g270.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 483aa MW: 54893.9 Da PI: 6.4064

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000395.1_g270.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.3	1e-23	99	199	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k Pav_sc0000395.1_g270.1.mk 99 KWTDTMVRLLIMAVFYIGDEGGSEGtdptgkkksvggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 182 7************999999965346677788999999******************************************* PP trihelix 71 r.tsessstcpyfdqle 86 + +++++++ ++++++ Pav_sc0000395.1_g270.1.mk 183 GtACRVVENQGLLEKMD 199 *5599999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MESNGLFSGI LGLEMPLHQT QNPQNPQNPH HMHQPQMVAY AHHDPDHHQH PHQPVKQGYP 60 FATKSKQIAL SDDDEPGFGA DDNSNGDNKR KISPWQRMKW TDTMVRLLIM AVFYIGDEGG 120 SEGTDPTGKK KSVGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN KRYKRVNDIL 180 GKGTACRVVE NQGLLEKMDL SPKMKEEVRK LLNSKHLFFR EMCAYHNSCG HGTVGGVSNG 240 AHNSPPEVAT EPSEIPAHQQ QPQQQRCFHS SENAHVVANS GRSETEASKM AKGGSGGEDE 300 DEDYEDDDSE DEDEEEEEVV EVGPGSRGLM GHGHHEDDDD NDDRASLKRP RKEGCFSGPS 360 SSQLTHQLGC EVRGVLQDAS KSPWEKKQWL KTRLIQLEEQ QVSYQYQAFE LEKQRLKWIK 420 FSGKKERDME RAKLENERRR LENERMLLLV RKKELELLEL HHQQQQQQQN SSNKRSDPSS 480 LTG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MESNGLFSGI LGLEMPLHQT QNPQNPQNPH HMHQPQMVAY AHHDPDHHQH PHQPVKQGYP  60
FATKSKQIAL SDDDEPGFGA DDNSNGDNKR KISPWQRMKW TDTMVRLLIM AVFYIGDEGG  120
SEGTDPTGKK KSVGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN KRYKRVNDIL  180
GKGTACRVVE NQGLLEKMDL SPKMKEEVRK LLNSKHLFFR EMCAYHNSCG HGTVGGVSNG  240
AHNSPPEVAT EPSEIPAHQQ QPQQQRCFHS SENAHVVANS GRSETEASKM AKGGSGGEDE  300
DEDYEDDDSE DEDEEEEEVV EVGPGSRGLM GHGHHEDDDD NDDRASLKRP RKEGCFSGPS  360
SSQLTHQLGC EVRGVLQDAS KSPWEKKQWL KTRLIQLEEQ QVSYQYQAFE LEKQRLKWIK  420
FSGKKERDME RAKLENERRR LENERMLLLV RKKELELLEL HHQQQQQQQN SSNKRSDPSS  480
LTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-77	Trihelix family protein