PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000396.1_g1000.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 331aa    MW: 37579 Da    PI: 10.2168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000396.1_g1000.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-31269327259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp ++++tYegeH+h+
  Pav_sc0000396.1_g1000.1.mk 269 ADEYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERSLEDPAMLVVTYEGEHKHS 327
                                 69************************9988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDEVEEANKA AVESCHGVLS HLCQPKGQVH CKNLLAETEE AVFKFKRVVS LLGSGLGHGR  60
VRKLKKFKQP PLAQNIFLDG PNYRLDISTK PLQLLPATSV ENRRAEKDSK YGSSLRHTQS  120
QKVFLGNPNP VVDLDMNIKL PLQIPKTKPL QQYHFLEQKH EHQQEIQRMQ LQPQQLKYQA  180
DTMYSGRNRG INLAFDRSTR TPSMSSARSF VSCLSVDGGV ANTHCDSFQL IRGVPQPPDR  240
ISQQQRRKVR VKRSFKVPAI SNKIADIPAD EYSWRKYGQK PIKGSPYPRG YYKCSSIRGC  300
PARKHVERSL EDPAMLVVTY EGEHKHSPSE Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-65WRKY family protein