PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000396.1_g1130.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 341aa MW: 36011.4 Da PI: 6.044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000396.1_g1130.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.8e-10	190	234	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L Pav_sc0000396.1_g1130.1.mk 190 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 234 99*********************8.....6**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MAGNPPEGLG DDFFEQILAV PPSYSTGGAD SAGGGYGDVG SMPMVLQLGS GGSSSAAAAG 60 GGSGGGGYRG VGMGMGMPLG LNLEQGGFIG QERFRELREE VEANTNNNIN TSNVSASVSS 120 AMNERDSVHM TNLFPAFGHL QNHSLRPTPP PPQPHQFHSQ PSPGPVAAVH HPPAIRPRVR 180 ARRGQATDPH SIAERLRRER IAERMKALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKV 240 LSMSRLGGAG AVAQLVADVP LSAVEGEGIE GGTNQQAWEK WSNDGTEQQV AKLMEEDVGA 300 AMQFLQSKAL CIMPISLAPA IFRTHQPDAT TLVKPESNSS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	200	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	1e-60	bHLH family protein