PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000396.1_g640.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 252aa    MW: 28565.2 Da    PI: 4.7016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000396.1_g640.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-20117166355
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+ +++g
  Pav_sc0000396.1_g640.1.mk 117 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAEEAALAYDQAAFAMRG 166
                                9*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDSSFFQNPI SEFSSDSSSS FNSTLDQYYS SDHHHHLSWS WDMFNFVDHH HHSQPLPQLP  60
FNENDSEEML LYGVLAEAPA GGDHNNSSES ITHSNKDIHE EVNSSNSTPE EDQAISYRGV  120
RRRPWGKFAA EIRDSTRNGV RVWLGTFDTA EEAALAYDQA AFAMRGSLAV LNFPADVVYQ  180
SLVEMKYGFE EGSSPVLALK RRHSLKRKSS MNKKKKLSDH QKNEENDDED QLVLEDLGAD  240
YLEELLSISA MT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200216KRRHSLKRKSSMNKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-48ERF family protein