PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000405.1_g280.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 163aa    MW: 18568.2 Da    PI: 9.6527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000405.1_g280.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-095298655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                 rE+ RR+r+N++f eL ++l +    + +K +K +iL+ Av+ + +Lq
  Pav_sc0000405.1_g280.1.mk 52 ACREKLRRNRLNERFLELVSVLDPG---RLPKTDKNAILTDAVRALTQLQ 98
                               689*********************8...89*****************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MFVSGVEADC SSGDSDNLME VGSQKRNMLW PNVLQMPFRL RSESYGASFS KACREKLRRN  60
RLNERFLELV SVLDPGRLPK TDKNAILTDA VRALTQLQSE SKKLKETIES SQANIKVLKA  120
EKSELRDEKH RLRVEKEKLE QQVIAMSAQN DISQDHILRP PTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-31bHLH family protein