PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000405.1_g420.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 455aa MW: 50740.7 Da PI: 6.5472

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000405.1_g420.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	304	348	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n r RR+++ ++ L +llP + +K++ a++ ++A +Y+k Lq Pav_sc0000405.1_g420.1.mk 304 NSLARGRRQKLSDKTRCLEKLLPLD-----RKMDTATVFQEAYKYVKFLQ 348 67789*****************9.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MEDSELVMLM RSLLAKAQEE INTTNTWEAE AEEEEEEEEV PTFTAMLSSA GVSLHSFLST 60 TAAHDDPLDP NAMSSSSSLM PLPFSEFAQD TLITTTPIHS PTTTFNFRTA AEVDYIQTQM 120 QSPILRLPKH EPISNYEDYF PIPSPSNTNV STSPPFHHLH QQQYQFYNHP PDLNLEFTMH 180 SASSATSSPI HHPSPYDSMN DCSSIFHHLP DLLPLDPFNS PYSSSSSSSS YKRPRLLDPP 240 HFQNLHLSTP LPLFPPNNNT HNALLPTSSS SPYKFPAKPR TRKRGTPSPS PSPSPFPSPS 300 PHTNSLARGR RQKLSDKTRC LEKLLPLDRK MDTATVFQEA YKYVKFLQAQ VTALQAMPVV 360 TPNTSAAASA TGFDDDHLSP MSSRTTGGLE RLSRNQLLQV LLNSPVAQTV MYSQGCCVFS 420 VEQLAKLNRS RSSRALNLLR HYYPHLFFDS HSPTN

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MEDSELVMLM RSLLAKAQEE INTTNTWEAE AEEEEEEEEV PTFTAMLSSA GVSLHSFLST  60
TAAHDDPLDP NAMSSSSSLM PLPFSEFAQD TLITTTPIHS PTTTFNFRTA AEVDYIQTQM  120
QSPILRLPKH EPISNYEDYF PIPSPSNTNV STSPPFHHLH QQQYQFYNHP PDLNLEFTMH  180
SASSATSSPI HHPSPYDSMN DCSSIFHHLP DLLPLDPFNS PYSSSSSSSS YKRPRLLDPP  240
HFQNLHLSTP LPLFPPNNNT HNALLPTSSS SPYKFPAKPR TRKRGTPSPS PSPSPFPSPS  300
PHTNSLARGR RQKLSDKTRC LEKLLPLDRK MDTATVFQEA YKYVKFLQAQ VTALQAMPVV  360
TPNTSAAASA TGFDDDHLSP MSSRTTGGLE RLSRNQLLQV LLNSPVAQTV MYSQGCCVFS  420
VEQLAKLNRS RSSRALNLLR HYYPHLFFDS HSPTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	3e-24	bHLH family protein