PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000412.1_g610.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 801aa MW: 88595.2 Da PI: 6.3069

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000412.1_g610.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.4	2.5e-27	572	621	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik Pav_sc0000412.1_g610.1.mk 572 EKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQNGITRWPSRKIKM 621 799*********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MDYGALMPNS SSYGTLSDTT MEGDFMNEIL FEGCWLQSNA GFNLLQQQQQ QPVCPPISRA 60 LTDHPSHYFP PYDHQSNSTV AHLSMSPHQQ IYQEENTDGS YPESHSSFAV EGNTEADRRL 120 WIGPRVNPGP SSSMKERLML AIGYLKECTK GRDVLIQIWV PIKRGGRQYL TTRDQPFSLD 180 PNCKSLAGYR NVSKDYQFIT EEDSAESVGL PGRAFLGKLP EWTPDVRFFR SYEYPRIDYA 240 QQYDVRGSLA LPIFENGSGT CLGVVEIVMT PQKVNYRPEL EYVCQALEAV DLRSSQNFCP 300 HCVKNYAHCV STVDAACFVA DLDILGLHEA CSEHHLCRGQ GIVGAAFTTN KPCFATDIKA 360 FSKTEYPLSH HARMFGLHAA VAIPFRSVCT GPADFVLEFF LPKDCQDPEE QKQMLNSLCI 420 VIQQACWSLH VDVDKELEEE IMFPIREPVI GSDGGLHEEE TQRLISSPTE EPSGKESSWI 480 AHMIEAQQKG KGVSVSLDYQ TEEPKEEFKV TTHWDNTQGS LHSGQVFSEF GQLHQSSGSH 540 GNVEGGADSY SFGGRRTSGG RKAGEKRRTK TEKTISLPVL RQYFAGSLKD AAKSIGVCPT 600 TLKRICRQNG ITRWPSRKIK MVGHSLKKLQ LVIDSVQGAE GAIHIGSFYS SFPELNSPKF 660 PGSGQYSSMN MSDHSKQVNP LQHDQSGLYS HGTTTKSPSS SCSQTSGPSV CVAGAQQHTV 720 TINTLSSGDA LMTEDPVGVL KRACSDADLH ASFQEETKLI YRSESHKSFS DNLSYENLPP 780 LPGSSGRSLR DGLQSKSYFQ G

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MDYGALMPNS SSYGTLSDTT MEGDFMNEIL FEGCWLQSNA GFNLLQQQQQ QPVCPPISRA  60
LTDHPSHYFP PYDHQSNSTV AHLSMSPHQQ IYQEENTDGS YPESHSSFAV EGNTEADRRL  120
WIGPRVNPGP SSSMKERLML AIGYLKECTK GRDVLIQIWV PIKRGGRQYL TTRDQPFSLD  180
PNCKSLAGYR NVSKDYQFIT EEDSAESVGL PGRAFLGKLP EWTPDVRFFR SYEYPRIDYA  240
QQYDVRGSLA LPIFENGSGT CLGVVEIVMT PQKVNYRPEL EYVCQALEAV DLRSSQNFCP  300
HCVKNYAHCV STVDAACFVA DLDILGLHEA CSEHHLCRGQ GIVGAAFTTN KPCFATDIKA  360
FSKTEYPLSH HARMFGLHAA VAIPFRSVCT GPADFVLEFF LPKDCQDPEE QKQMLNSLCI  420
VIQQACWSLH VDVDKELEEE IMFPIREPVI GSDGGLHEEE TQRLISSPTE EPSGKESSWI  480
AHMIEAQQKG KGVSVSLDYQ TEEPKEEFKV TTHWDNTQGS LHSGQVFSEF GQLHQSSGSH  540
GNVEGGADSY SFGGRRTSGG RKAGEKRRTK TEKTISLPVL RQYFAGSLKD AAKSIGVCPT  600
TLKRICRQNG ITRWPSRKIK MVGHSLKKLQ LVIDSVQGAE GAIHIGSFYS SFPELNSPKF  660
PGSGQYSSMN MSDHSKQVNP LQHDQSGLYS HGTTTKSPSS SCSQTSGPSV CVAGAQQHTV  720
TINTLSSGDA LMTEDPVGVL KRACSDADLH ASFQEETKLI YRSESHKSFS DNLSYENLPP  780
LPGSSGRSLR DGLQSKSYFQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein