PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000414.1_g230.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 332aa    MW: 38107.7 Da    PI: 8.2193
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000414.1_g230.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.35.3e-27205254352
                     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl
  Pav_sc0000414.1_g230.1.mk 205 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 254
                                79**********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MDSSDCEPHL LRSLLVFKNT INQELIRSLH VYRLDEGKEN EVEREFVLSA NEPYVELPAD  60
PLLRLMKFPV SQVHEGHVNG CWVCIFAFQA NCPPNFTCIP FILSVSRNWK LKSIPALAND  120
LQMIFELSNK KDDKKPLQRS GEETCQGSND NNHQLIRSSP VLDLDLNSLP CPVPMSESSE  180
DQEIGRSLPG IMEKKKKRAP SDHVANIALS DLAKYFDLPI VEASRNLNVG LTVLKKKCRE  240
FGIPRWPHRK IKSLDGLIRD LQEETEIQQQ ENQAAALAVA KRQRMLENEK ESIERKPFLE  300
MKTETKKFRQ DVFKRRHRAR VLRSQGLSNS DN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.16e-81Nin-like family protein