PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000440.1_g260.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23659.7 Da    PI: 10.0252
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000440.1_g260.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.4e-182468145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               k+i+n+s  qvtfskRr+g++ KA+ L  LC+aeva+++fs++g+
  Pav_sc0000440.1_g260.1.mk 24 KKIQNTSSLQVTFSKRRTGLFRKASQLGALCGAEVAILVFSPHGR 68
                               689***************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSDDSSSTVT KQKRTIGRKK IDIKKIQNTS SLQVTFSKRR TGLFRKASQL GALCGAEVAI  60
LVFSPHGRPF VFGHPSVDSV ISRLAGTSTS ADCMHASGDD EDTQSSIVQS NPSHSGTTYQ  120
TSPNQESLSL RLRIGGGGSM GLVKEETQEV AEEWSGGRGF WWDQPTEKMK LHELKQFKTS  180
LEDMRAKVGM QLDEMARRKL AARDFLGVYR NGRCG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-34M-type_MADS family protein